NCBI
National Center for
Biotechnology Information
Search
6SAG:
Cryo-EM structure of TMV with Ca2+ at low pH
PDB ID:
6SAG
Download
MMDB ID:
179687
PDB Deposition Date:
2019/7/16
Updated in MMDB:
2019/11
Experimental Method:
electron microscopy
Resolution:
2 Å
Source Organism:
Tobacco mosaic virus (vulgare)
Similar Structures:
VAST+
Download sequence data
Biological Unit for 6SAG: 80-meric; determined by software (UCSF CHIMERA 1.11.2_b41376.)
Molecular Components in 6SAG
Label
Count
Molecule
Proteins (40 molecules)
A
A_1
A_2
A_3
A_4
A_5
A_6
A_7
A_8
A_9
A_10
A_11
A_12
A_13
A_14
A_15
A_16
A_17
A_18
A_19
A_20
A_21
A_22
A_23
A_24
A_25
A_26
A_27
A_28
A_29
…
40
Capsid Protein
(Gene symbol:
TMVgp6
)
Nucleotides(40 molecules)
R
R_1
R_2
R_3
R_4
R_5
R_6
R_7
R_8
R_9
R_10
R_11
R_12
R_13
R_14
R_15
R_16
R_17
R_18
R_19
R_20
R_21
R_22
R_23
R_24
R_25
R_26
R_27
R_28
R_29
…
40
RNA (5'-r(p*gp*ap*a)-3')
Chemicals and Non-standard biopolymers (200 molecules)
1
40
CALCIUM ION
2
160
MAGNESIUM ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH.
"
MMDB and VAST+: tracking structural similarities between macromolecular complexes.
Nucleic Acids Res. 2014 Jan; 42(Database issue)
:D297-303