6SA0: Ternary complex of Prim-PolC from Mycobacterium smegmatis with 2nt gapped DNA and UpNHpp

PDB ID: 6SA0Download
MMDB ID: 194569
PDB Deposition Date: 2019/7/15
Updated in MMDB: 2020/12
Experimental Method:
x-ray diffraction
Resolution: 2.209  Å
Source Organism:
Mycolicibacterium smegmatis MC2 155▼
Similar Structures:
Biological Unit for 6SA0: tetrameric; determined by author
Molecular Components in 6SA0
Label Count Molecule
Protein (1 molecule)
1
DNA Polymerase Ligd, Polymerase Domain
Molecule annotation
Nucleotides(3 molecules)
1
DNA (5'-d(p*gp*cp*gp*ap*gp*cp*g)-3')
Molecule annotation
1
DNA (5'-d(*cp*gp*cp*tp*cp*gp*cp*ap*ap*cp*gp*cp*a)-3')
Molecule annotation
1
DNA (5'-d(p*tp*gp*cp*gp)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (6 molecules)
1
1
5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]uridine5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]uridine
2
2
MANGANESE (II) IONMANGANESE (II) ION
3
1
CACODYLATE IONCACODYLATE ION
4
2
1,2-ETHANEDIOL1,2-ETHANEDIOL
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303