6S48: AvaII RESTRICTION ENDONUCLEASE IN COMPLEX WITH PARTIALLY CLEAVED dsDNA

PDB ID: 6S48Download
MMDB ID: 187751
PDB Deposition Date: 2019/6/26
Updated in MMDB: 2020/07
Experimental Method:
x-ray diffraction
Resolution: 1.9  Å
Source Organism:
Nostoc sp. PCC 7120 = FACHB-418▼
Similar Structures:
Biological Unit for 6S48: nonameric; determined by author
Molecular Components in 6S48
Label Count Molecule
Proteins (2 molecules)
2
Type II Site-specific Deoxyribonuclease
Molecule annotation
Nucleotides(7 molecules)
1
DNA (5'-d(*gp*ap*tp*gp*gp*tp*cp*cp*tp*ap*c)-3')
Molecule annotation
2
DNA (5'-d(*gp*tp*ap*g)-3')
Molecule annotation
2
DNA (5'-d(p*gp*ap*cp*cp*ap*tp*c)-3')
Molecule annotation
1
DNA (5'-d(*gp*ap*tp*g)-3')
Molecule annotation
1
DNA (5'-d(p*gp*tp*cp*cp*tp*ap*c)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (10 molecules)
1
5
CALCIUM IONCALCIUM ION
2
2
BETA-MERCAPTOETHANOLBETA-MERCAPTOETHANOL
3
1
PENTAETHYLENE GLYCOLPENTAETHYLENE GLYCOL
4
1
TRIETHYLENE GLYCOLTRIETHYLENE GLYCOL
5
1
SERINESERINE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303