6S2U: Structure of the catalytic domain of T. thermophilus Rel in complex with AMP and ppGpp

PDB ID: 6S2UDownload
MMDB ID: 189785
PDB Deposition Date: 2019/6/22
Updated in MMDB: 2020/07
Experimental Method:
x-ray diffraction
Resolution: 2.95  Å
Source Organism:
Similar Structures:
Biological Unit for 6S2U: monomeric; determined by author and by software (PISA)
Molecular Components in 6S2U
Label Count Molecule
Protein (1 molecule)
1
(P)ppgpp Synthetase I, Spot/rela
Molecule annotation
Chemicals and Non-standard biopolymers (6 molecules)
1
1
MANGANESE (II) IONMANGANESE (II) ION
2
1
ADENOSINE MONOPHOSPHATEADENOSINE MONOPHOSPHATE
3
1
[[[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-4-oxidanyl-2-[[oxidanyl(phosphonooxy)phosphoryl]oxymethyl]oxolan-3-yl]oxy-oxidanyl-phosphoryl]amino]phosphonic acid[[[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-4-oxidanyl-2-[[oxidanyl(phosphonooxy)phosphoryl]oxymethyl]oxolan-3-yl]oxy-oxidanyl-phosphoryl]amino]phosphonic acid
4
1
trimethylamine oxidetrimethylamine oxide
5
2
MAGNESIUM IONMAGNESIUM ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303