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6RKS:
E. coli DNA Gyrase - DNA binding and cleavage domain in State 1 without TOPRIM insertion
PDB ID:
6RKS
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MMDB ID:
181115
PDB Deposition Date:
2019/4/30
Updated in MMDB:
2019/11
Experimental Method:
electron microscopy
Resolution:
4 Å
Source Organism:
Escherichia coli K-12
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Taxonomy
Molecule
Escherichia coli K-12
A, B, C, D
Escherichia coli
F, E, G, H
Similar Structures:
VAST+
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Biological Unit for 6RKS: octameric; determined by author
Molecular Components in 6RKS
Label
Count
Molecule
Proteins (4 molecules)
A
C
2
DNA Gyrase Subunit a
B
D
2
DNA Gyrase Subunit B
Nucleotides(4 molecules)
F
E
2
DNA Strand 1
G
H
2
DNA Strand 2
Chemical and Non-standard biopolymers (1 molecule)
1
1
(3~{R})-3-[[4-(3,4-dihydro-2~{H}-pyrano[2,3-c]pyridin-6-ylmethylamino)piperidin-1-yl]methyl]-1,4,7-triazatricyclo[6.3.1.0^{4,12}]dodeca-6,8(12),9-triene-5,11-dione
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH.
"
MMDB and VAST+: tracking structural similarities between macromolecular complexes.
Nucleic Acids Res. 2014 Jan; 42(Database issue)
:D297-303