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6RGK:
Crystal structure of T. brucei PDE-B1 catalytic domain with inhibitor NPD-055
PDB ID:
6RGK
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MMDB ID:
177815
PDB Deposition Date:
2019/4/16
Updated in MMDB:
2019/09
Experimental Method:
x-ray diffraction
Resolution:
2.03 Å
Source Organism:
Trypanosoma brucei
Similar Structures:
VAST+
Download sequence data
Biological Unit for 6RGK: monomeric; determined by author
Molecular Components in 6RGK
Label
Count
Molecule
Protein (1 molecule)
A
1
Phosphodiesterase
Chemicals and Non-standard biopolymers (8 molecules)
1
1
ZINC ION
2
1
MAGNESIUM ION
3
1
FORMIC ACID
4
1
GLYCEROL
5
3
GUANIDINE
6
1
3-[5-[(4~{a}~{R},8~{a}~{S})-3-cycloheptyl-4-oxidanylidene-4~{a},5,6,7,8,8~{a}-hexahydrophthalazin-1-yl]-2-methoxy-phenyl]-~{N}-butyl-prop-2-ynamide
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH.
"
MMDB and VAST+: tracking structural similarities between macromolecular complexes.
Nucleic Acids Res. 2014 Jan; 42(Database issue)
:D297-303