6RGD: Crystal structure of NAD kinase 1 from Listeria monocytogenes in complexe with an inhibitor

PDB ID: 6RGDDownload
MMDB ID: 184384
PDB Deposition Date: 2019/4/16
Updated in MMDB: 2024/05
Experimental Method:
x-ray diffraction
Resolution: 2.3  Å
Source Organism:
Similar Structures:
Biological Unit for 6RGD: tetrameric; determined by author and by software (PISA)
Molecular Components in 6RGD
Label Count Molecule
Proteins (4 molecules)
4
NAD Kinase 1
(Gene symbol: ppnK)
Molecule annotation
Chemicals and Non-standard biopolymers (8 molecules)
1
4
CITRIC ACIDCITRIC ACID
2
4
(2~{R},3~{R},4~{S},5~{R})-2-(6-aminopurin-9-yl)-5-[[4-[6-azanyl-9-[(2~{R},3~{R},4~{S},5~{R})-5-(hydroxymethyl)-3,4-bis(oxidanyl)oxolan-2-yl]purin-8-yl]but-3-ynylamino]methyl]oxolane-3,4-diol(2~{R},3~{R},4~{S},5~{R})-2-(6-aminopurin-9-yl)-5-[[4-[6-azanyl-9-[(2~{R},3~{R},4~{S},5~{R})-5-(hydroxymethyl)-3,4-bis(oxidanyl)oxolan-2-yl]purin-8-yl]but-3-ynylamino]methyl]oxolane-3,4-diol
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303