6RB6: Crystal structure of T. brucei PDE-B1 catalytic domain with inhibitor NPD-053

PDB ID: 6RB6Download
MMDB ID: 177811
PDB Deposition Date: 2019/4/9
Updated in MMDB: 2019/09
Experimental Method:
x-ray diffraction
Resolution: 1.9  Å
Source Organism:
Similar Structures:
Biological Unit for 6RB6: monomeric; determined by author
Molecular Components in 6RB6
Label Count Molecule
Protein (1 molecule)
1
Phosphodiesterase
Molecule annotation
Chemicals and Non-standard biopolymers (15 molecules)
1
1
MAGNESIUM IONMAGNESIUM ION
2
1
ZINC IONZINC ION
3
7
GUANIDINEGUANIDINE
4
3
1,2-ETHANEDIOL1,2-ETHANEDIOL
5
2
FORMIC ACIDFORMIC ACID
6
1
3-[5-[(4~{a}~{R},8~{a}~{S})-3-cycloheptyl-4-oxidanylidene-4~{a},5,8,8~{a}-tetrahydrophthalazin-1-yl]-2-methoxy-phenyl]-~{N}-(furan-2-ylmethyl)prop-2-ynamide3-[5-[(4~{a}~{R},8~{a}~{S})-3-cycloheptyl-4-oxidanylidene-4~{a},5,8,8~{a}-tetrahydrophthalazin-1-yl]-2-methoxy-phenyl]-~{N}-(furan-2-ylmethyl)prop-2-ynamide
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303