National Center for
Biotechnology Information

6R5Q: Structure of XBP1u-paused ribosome nascent chain complex (post-state)

PDB ID:

MMDB ID:

192645

PDB Deposition Date:

2019/3/25

Updated in MMDB:

2024/12

Experimental Method:

electron microscopy

Resolution:

3 Å

Source Organism:

Oryctolagus cuniculus▼

Taxonomy	Molecule
Oryctolagus cuniculus	5, 7, 8, A, B, C, D, E, F, G, H, I, J, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, a, b, c, d, e, f , g, h, i, j, k, l, m, n, o, p, r, s, t, K, q, u, v, w, x, y, z, BB, CC, DD, SS, EE, RR, QQ, MM, WW, UU, KK, II, PP, GG, HH, TT, VV, NN, OO, LL, JJ, FF, 9, 0, 6 , AA
Homo sapiens	1, 4
Saccharomyces cerevisiae	3, 2

Similar Structures:

Biological Unit for 6R5Q: 85-meric; determined by author

Molecular Components in 6R5Q
Label	Count	Molecule
Proteins (78 molecules)
1	1	X-box-binding Protein 1
A	1	UL2
B	1	UL3
C	1	UL4
D	1	60S Ribosomal Protein L5
E	1	60S Ribosomal Protein L6
F	1	Ul30
G	1	EL8
H	1	UL6
I	1	Ribosomal Protein L10 (Predicted)
J	1	Ribosomal Protein L11
L	1	60S Ribosomal Protein L13
M	1	Ribosomal Protein L14
N	1	Ribosomal Protein L15
O	1	Ul13
P	1	Ul22
Q	1	El18
R	1	El19
S	1	El20
T	1	El21
U	1	El22
V	1	El14
W	1	Ribosomal Protein L24
X	1	Ul23
Y	1	Ribosomal Protein L26
Z	1	60S Ribosomal Protein L27
a	1	Ul15
b	1	El29
c	1	El30
d	1	El31
e	1	El32
f	1	El33
g	1	El34
h	1	Ul29
i	1	60S Ribosomal Protein L36
j	1	Ribosomal Protein L37
k	1	El38
l	1	El39
m	1	El40
n	1	60S Ribosomal Protein L41
o	1	El42
p	1	Ribosomal Protein El43
r	1	El28
s	1	60S Acidic Ribosomal Protein P0
t	1	Ul11
q	1	US2
u	1	40S Ribosomal Protein S3A
v	1	US5
w	1	Ribosomal Protein S3
x	1	40S Ribosomal Protein S4
y	1	Ribosomal Protein S5
z	1	40S Ribosomal Protein S6
BB	1	40S Ribosomal Protein S7
CC	1	40S Ribosomal Protein S8
DD	1	Ribosomal Protein S9 (Predicted)
SS	1	Es10
EE	1	Ribosomal Protein S11
RR	1	40S Ribosomal Protein S12
QQ	1	Ribosomal Protein Us15
MM	1	Us11
WW	1	Us17
UU	1	Ribosomal Protein S16
KK	1	Es17
II	1	Us13
PP	1	Es19
GG	1	Us10
HH	1	Es21
TT	1	Ribosomal Protein S15a
VV	1	Ribosomal Protein S23
NN	1	Es24
OO	1	Ribosomal Protein Es25
LL	1	Es26
JJ	1	40S Ribosomal Protein S27
FF	1	Ribosomal Protein S28
9	1	Us14
0	1	Es31
6	1	Ribosomal Protein Rack1
AA	1	40S Ribosomal Protein S30
Nucleotides(7 molecules)
3	1	E-trna
2	1	P-trna
5	1	28S Ribosomal RNA
7	1	5S rRNA
8	1	5.8s Ribosomal RNA
K	1	18S Ribosomal RNA
4	1	mRNA
Chemicals and Non-standard biopolymers (305 molecules)
1	299	MAGNESIUM ION
2	6	ZINC ION

* Click molecule labels to explore molecular sequence information.

Citing MMDB