6PY9: Crystal structure of red kidney bean purple acid phosphatase in complex with adenosine diphosphate metavanadate

PDB ID: 6PY9Download
MMDB ID: 188117
PDB Deposition Date: 2019/7/29
Updated in MMDB: 2024/10
Experimental Method:
x-ray diffraction
Resolution: 2.2  Å
Source Organism:
Similar Structures:
Biological Unit for 6PY9: tetrameric; determined by author
Molecular Components in 6PY9
Label Count Molecule
Proteins (4 molecules)
4
Fe(3+)-zn(2+) Purple Acid Phosphatase
Molecule annotation
Chemicals and Non-standard biopolymers (100 molecules)
1
19
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
2
4
alpha-L-fucopyranosealpha-L-fucopyranose
3
4
ZINC IONZINC ION
4
4
FE (III) IONFE (III) ION
5
2
ADP METAVANADATEADP METAVANADATE
6
11
SULFATE IONSULFATE ION
7
3
SODIUM IONSODIUM ION
8
32
1,2-ETHANEDIOL1,2-ETHANEDIOL
9
13
GLYCEROLGLYCEROL
10
4
TRIETHYLENE GLYCOLTRIETHYLENE GLYCOL
11
1
[(2~{R},3~{R},4~{R},5~{S})-2-(5-azanylimidazol-1-yl)-4-[[bis(oxidanyl)-[tris(oxidanyl)vanadiooxy]vanadio]oxy-bis(oxidanyl)vanadio]oxy-5-[[bis(oxidanyl)-[tris(oxidanyl)vanadiooxy]vanadio]oxymethyl]oxolan-3-yl]oxy-tris(oxidanyl)vanadium[(2~{R},3~{R},4~{R},5~{S})-2-(5-azanylimidazol-1-yl)-4-[[bis(oxidanyl)-[tris(oxidanyl)vanadiooxy]vanadio]oxy-bis(oxidanyl)vanadio]oxy-5-[[bis(oxidanyl)-[tris(oxidanyl)vanadiooxy]vanadio]oxymethyl]oxolan-3-yl]oxy-tris(oxidanyl)vanadium
12
1
CHLORIDE IONCHLORIDE ION
13
2
CITRATE ANIONCITRATE ANION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303