6PKI: Zebrafish N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase (NAGPA) catalytic domain (C56S C230S) in complex with N-acetyl-alpha-D-glucosamine (alpha-GlcNAc) and mannose 6-phosphate (M6P)

PDB ID: 6PKIDownload
MMDB ID: 184315
PDB Deposition Date: 2019/6/29
Updated in MMDB: 2023/10
Experimental Method:
x-ray diffraction
Resolution: 2.293  Å
Source Organism:
Similar Structures:
Biological Unit for 6PKI: dimeric; determined by author and by software (PISA)
Molecular Components in 6PKI
Label Count Molecule
Proteins (2 molecules)
2
N-acetylglucosamine-1-phosphodiester Alpha-n-acetylglucosaminidase
(Gene symbol: nagpa)
Molecule annotation
Chemicals and Non-standard biopolymers (12 molecules)
1
4
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
2
2
2-acetamido-2-deoxy-alpha-D-glucopyranose2-acetamido-2-deoxy-alpha-D-glucopyranose
3
2
6-O-phosphono-alpha-D-mannopyranose6-O-phosphono-alpha-D-mannopyranose
4
1
PENTAETHYLENE GLYCOLPENTAETHYLENE GLYCOL
5
3
CHLORIDE IONCHLORIDE ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303