6PH9: Crystal Structure of the Klebsiella pneumoniae LpxH-lipid X complex

PDB ID: 6PH9Download
MMDB ID: 184102
PDB Deposition Date: 2019/6/25
Updated in MMDB: 2023/10
Experimental Method:
x-ray diffraction
Resolution: 1.92  Å
Source Organism:
Similar Structures:
Biological Unit for 6PH9: monomeric; determined by author and by software (PISA)
Molecular Components in 6PH9
Label Count Molecule
Protein (1 molecule)
1
Udp-2,3-diacylglucosamine Hydrolase
Molecule annotation
Chemicals and Non-standard biopolymers (9 molecules)
1
4
MANGANESE (II) IONMANGANESE (II) ION
2
1
(R)-((2R,3S,4R,5R,6R)-3-HYDROXY-2-(HYDROXYMETHYL)-5-((R)-3-HYDROXYTETRADECANAMIDO)-6-(PHOSPHONOOXY)TETRAHYDRO-2H-PYRAN-4-YL) 3-HYDROXYTETRADECANOATE(R)-((2R,3S,4R,5R,6R)-3-HYDROXY-2-(HYDROXYMETHYL)-5-((R)-3-HYDROXYTETRADECANAMIDO)-6-(PHOSPHONOOXY)TETRAHYDRO-2H-PYRAN-4-YL) 3-HYDROXYTETRADECANOATE
3
2
TETRAETHYLENE GLYCOLTETRAETHYLENE GLYCOL
4
1
CALCIUM IONCALCIUM ION
5
1
1,2-ETHANEDIOL1,2-ETHANEDIOL
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303