6PD2: PntC-AEPT: fusion protein of phosphonate-specific cytidylyltransferase and 2-aminoethylphosphonate (AEP) transaminase from Treponema denticola in complex with cytidine monophosphate-AEP

PDB ID: 6PD2Download
MMDB ID: 178285
PDB Deposition Date: 2019/6/18
Updated in MMDB: 2023/10
Experimental Method:
x-ray diffraction
Resolution: 1.95  Å
Source Organism:
Similar Structures:
Biological Unit for 6PD2: dimeric; determined by author and by software (PISA)
Molecular Components in 6PD2
Label Count Molecule
Proteins (2 molecules)
2
Nucleotidyl Transferase/aminotransferase, Class V
(Gene symbol: TDE1415)
Molecule annotation
Chemicals and Non-standard biopolymers (33 molecules)
1
2
PYRIDOXAL-5'-PHOSPHATEPYRIDOXAL-5'-PHOSPHATE
2
4
MAGNESIUM IONMAGNESIUM ION
3
5
PHOSPHATE IONPHOSPHATE ION
4
2
5'-O-[(S)-{[(R)-(2-aminoethyl)(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]cytidine5'-O-[(S)-{[(R)-(2-aminoethyl)(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]cytidine
5
17
1,2-ETHANEDIOL1,2-ETHANEDIOL
6
3
ACETATE IONACETATE ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303