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6PD2:
PntC-AEPT: fusion protein of phosphonate-specific cytidylyltransferase and 2-aminoethylphosphonate (AEP) transaminase from Treponema denticola in complex with cytidine monophosphate-AEP
PDB ID:
6PD2
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MMDB ID:
178285
PDB Deposition Date:
2019/6/18
Updated in MMDB:
2019/09
Experimental Method:
x-ray diffraction
Resolution:
1.95 Å
Source Organism:
Treponema denticola ATCC 35405
Similar Structures:
VAST+
Download sequence data
Biological Unit for 6PD2: dimeric; determined by author and by software (PISA)
Molecular Components in 6PD2
Label
Count
Molecule
Proteins (2 molecules)
A
C
2
Nucleotidyl Transferase/aminotransferase, Class V
Chemicals and Non-standard biopolymers (33 molecules)
1
2
PYRIDOXAL-5'-PHOSPHATE
2
4
MAGNESIUM ION
3
5
PHOSPHATE ION
4
2
5'-O-[(S)-{[(R)-(2-aminoethyl)(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]cytidine
5
17
1,2-ETHANEDIOL
6
3
ACETATE ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH.
"
MMDB and VAST+: tracking structural similarities between macromolecular complexes.
Nucleic Acids Res. 2014 Jan; 42(Database issue)
:D297-303