6PB5: The E. coli class-II CAP-dependent transcription activation complex at the state 1 architecture

PDB ID: 6PB5Download
MMDB ID: 185293
PDB Deposition Date: 2019/6/13
Updated in MMDB: 2020/05
Experimental Method:
electron microscopy
Resolution: 4.52  Å
Source Organism:
Similar Structures:
Biological Unit for 6PB5: decameric; determined by author
Molecular Components in 6PB5
Label Count Molecule
Proteins (8 molecules)
2
DNA-directed RNA Polymerase Subunit Alpha
Molecule annotation
1
DNA-directed RNA Polymerase Subunit Beta
Molecule annotation
1
DNA-directed RNA Polymerase Subunit Beta'
Molecule annotation
1
DNA-directed RNA Polymerase Subunit Omega
Molecule annotation
1
RNA Polymerase Sigma Factor Rpod
(Gene symbol: rpoD)
Molecule annotation
2
Camp-activated Global Transcriptional Regulator CRP
(Gene symbol: crp)
Molecule annotation
Nucleotides(2 molecules)
1
Synthetic Nontemplate Strand DNA (78-mer)
Molecule annotation
1
Synthetic Template Strand DNA (78-mer)
Molecule annotation
Chemicals and Non-standard biopolymers (5 molecules)
1
2
ZINC IONZINC ION
2
1
MAGNESIUM IONMAGNESIUM ION
3
2
ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATEADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303