6P1H: Cryo-EM Structure of DNA Polymerase Delta Holoenzyme

PDB ID: 6P1HDownload
MMDB ID: 180076
PDB Deposition Date: 2019/5/19
Updated in MMDB: 2019/12
Experimental Method:
electron microscopy
Resolution: 3.2  Å
Source Organism:
Saccharomyces cerevisiae S288C▼
Similar Structures:
Biological Unit for 6P1H: pentameric; determined by author and by software (PISA)
Molecular Components in 6P1H
Label Count Molecule
Proteins (3 molecules)
1
DNA Polymerase Delta Catalytic Subunit
Molecule annotation
1
DNA Polymerase Delta Small Subunit
Molecule annotation
1
DNA Polymerase Delta Subunit 3
Molecule annotation
Nucleotides(2 molecules)
2
DNA (30-mer)
Molecule annotation
Chemicals and Non-standard biopolymers (7 molecules)
1
1
IRON/SULFUR CLUSTERIRON/SULFUR CLUSTER
2
1
2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE
3
5
CALCIUM IONCALCIUM ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303