6OPN: CD4- and 17-bound HIV-1 Env B41 SOSIP in complex with small molecule GO35

PDB ID: 6OPNDownload
MMDB ID: 193868
PDB Deposition Date: 2019/4/25
Updated in MMDB: 2020/10
Experimental Method:
electron microscopy
Resolution: 3.5  Å
Source Organism:
Human immunodeficiency virus 1▼
Similar Structures:
Biological Unit for 6OPN: nonameric; determined by author
Molecular Components in 6OPN
Label Count Molecule
Proteins (9 molecules)
3
Envelope Glycoprotein Gp160
Molecule annotation
3
Envelope Glycoprotein Gp41
Molecule annotation
3
T-cell Surface Glycoprotein CD4
Molecule annotation
Chemicals and Non-standard biopolymers (51 molecules)
1
39
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
2
3
beta-D-mannopyranosebeta-D-mannopyranose
3
6
alpha-D-mannopyranosealpha-D-mannopyranose
4
3
[3'-(5-methyl-1,3,4-oxadiazol-2-yl)[1,1'-biphenyl]-3-yl](piperidin-1-yl)methanone[3'-(5-methyl-1,3,4-oxadiazol-2-yl)[1,1'-biphenyl]-3-yl](piperidin-1-yl)methanone
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303