6OPC: Cdc48 Hexamer in a complex with substrate and Shp1(Ubx Domain)

PDB ID: 6OPCDownload
MMDB ID: 177326
PDB Deposition Date: 2019/4/24
Updated in MMDB: 2019/12
Experimental Method:
electron microscopy
Resolution: 3.7  Å
Source Organism:
Similar Structures:
Biological Unit for 6OPC: octameric; determined by author
Molecular Components in 6OPC
Label Count Molecule
Proteins (8 molecules)
6
Cell Division Control Protein 48
(Gene symbol: CDC48)
Molecule annotation
1
Substrate Bound to the Central Pore of the Cdc48 Hexamer
Molecule annotation
1
UBX Domain-containing Protein 1
(Gene symbol: SHP1)
Molecule annotation
Chemicals and Non-standard biopolymers (26 molecules)
1
10
ADENOSINE-5'-DIPHOSPHATEADENOSINE-5'-DIPHOSPHATE
2
8
BERYLLIUM TRIFLUORIDE IONBERYLLIUM TRIFLUORIDE ION
3
8
MAGNESIUM IONMAGNESIUM ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303