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6OJ2: Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site

PDB ID:

6OJ2 Download

MMDB ID:

192586

PDB Deposition Date:

2019/4/10

Updated in MMDB:

2023/10

Experimental Method:

x-ray diffraction

Resolution:

3.2 Å

Source Organism:

Thermus thermophilus HB8▼

Taxonomy

Molecule

Thermus thermophilus HB8

QA, QB, QC, QD, QE, QF, QG, QH, QI,
QJ, QK, QL, QM, QN, QO, QP, QQ,
QR, QS, QT, QU, R0, R1, R2, R3,
R4, R5, R6, R7, R8, R9, RA, RB,
RD, RE, RF, RG, RH, RI, RN, RO,
RP, RQ, RR, RS, RT, RU, RV, RW,
RX, RY, RZ, XA, XB, XC, XD, XE,
XF, XG, XH, XI, XJ, XK, XL, XM,
XN, XO, XP, XQ, XR, XS, XT, XU,
Y0, Y1, Y2, Y3, Y4, Y5, Y6, Y7,
Y8, Y9, YA, YB, YD, YE, YF, YG,
YH, YI, YN, YO, YP, YQ, YR, YS,
YT, YU, YV, YW, YX, YY, YZ

Escherichia coli

QV, QW, QX, QY, XV, XW, XX, XY

Similar Structures:

Biological Unit for 6OJ2: 56-meric; determined by author

Molecular Components in 6OJ2
Label	Count	Molecule
Proteins (49 molecules)
QB	1	30S Ribosomal Protein S2
QC	1	30S Ribosomal Protein S3
QD	1	30S Ribosomal Protein S4
QE	1	30S Ribosomal Protein S5
QF	1	30S Ribosomal Protein S6
QG	1	30S Ribosomal Protein S7
QH	1	30S Ribosomal Protein S8
QI	1	30S Ribosomal Protein S9
QJ	1	30S Ribosomal Protein S10
QK	1	30S Ribosomal Protein S11
QL	1	30S Ribosomal Protein S12
QM	1	30S Ribosomal Protein S13
QN	1	30S Ribosomal Protein S14 Type Z
QO	1	30S Ribosomal Protein S15
QP	1	30S Ribosomal Protein S16
QQ	1	30S Ribosomal Protein S17
QR	1	30S Ribosomal Protein S18
QS	1	30S Ribosomal Protein S19
QT	1	30S Ribosomal Protein S20
QU	1	30S Ribosomal Protein THX
R0	1	50S Ribosomal Protein L27
R1	1	50S Ribosomal Protein L28
R2	1	50S Ribosomal Protein L29
R3	1	50S Ribosomal Protein L30
R4	1	50S Ribosomal Protein L31
R5	1	50S Ribosomal Protein L32
R6	1	50S Ribosomal Protein L33
R7	1	50S Ribosomal Protein L34
R8	1	50S Ribosomal Protein L35
R9	1	50S Ribosomal Protein L36
RD	1	50S Ribosomal Protein L2
RE	1	50S Ribosomal Protein L3
RF	1	50S Ribosomal Protein L4
RG	1	50S Ribosomal Protein L5
RH	1	50S Ribosomal Protein L6
RI	1	50S Ribosomal Protein L9
RN	1	50S Ribosomal Protein L13
RO	1	50S Ribosomal Protein L14
RP	1	50S Ribosomal Protein L15
RQ	1	50S Ribosomal Protein L16
RR	1	50S Ribosomal Protein L17
RS	1	50S Ribosomal Protein L18
RT	1	50S Ribosomal Protein L19
RU	1	50S Ribosomal Protein L20
RV	1	50S Ribosomal Protein L21
RW	1	50S Ribosomal Protein L22
RX	1	50S Ribosomal Protein L23
RY	1	50S Ribosomal Protein L24
RZ	1	50S Ribosomal Protein L25
Nucleotides(7 molecules)
QA	1	16S rRNA
QV	1	P-site Trnafmet
QW	1	E-site Trnaala(ggc)
QX	1	mRNA
QY	1	A-site Trnaala(ggc)
RA	1	23S rRNA
RB	1	5S rRNA
Chemicals and Non-standard biopolymers (409 molecules)
1	407	MAGNESIUM ION
2	1	PAROMOMYCIN
3	1	IRON/SULFUR CLUSTER

* Click molecule labels to explore molecular sequence information.

Citing MMDB

Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303