6OF5: The crystal structure of dodecyloxy(naphthalen-1-yl)methylphosphonic acid in complex with red kidney bean purple acid phosphatase

PDB ID: 6OF5Download
MMDB ID: 179091
PDB Deposition Date: 2019/3/28
Updated in MMDB: 2023/10
Experimental Method:
x-ray diffraction
Resolution: 2.3  Å
Source Organism:
Similar Structures:
Biological Unit for 6OF5: tetrameric; determined by author
Molecular Components in 6OF5
Label Count Molecule
Proteins (4 molecules)
4
Fe(3+)-zn(2+) Purple Acid Phosphatase
Molecule annotation
Chemicals and Non-standard biopolymers (96 molecules)
1
26
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
2
10
alpha-L-fucopyranosealpha-L-fucopyranose
3
5
beta-D-mannopyranosebeta-D-mannopyranose
4
2
alpha-D-mannopyranosealpha-D-mannopyranose
5
4
ZINC IONZINC ION
6
4
FE (III) IONFE (III) ION
7
19
SULFATE IONSULFATE ION
8
5
SODIUM IONSODIUM ION
9
14
1,2-ETHANEDIOL1,2-ETHANEDIOL
10
5
TRIETHYLENE GLYCOLTRIETHYLENE GLYCOL
11
1
[(R)-{[(2E,4Z,8Z)-dodeca-2,4,8-trien-1-yl]oxy}(naphthalen-1-yl)methyl]phosphonic acid[(R)-{[(2E,4Z,8Z)-dodeca-2,4,8-trien-1-yl]oxy}(naphthalen-1-yl)methyl]phosphonic acid
12
1
GLYCEROLGLYCEROL
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303