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6ODM:
Herpes simplex virus type 1 (HSV-1) portal vertex-adjacent capsid/CATC, asymmetric unit
PDB ID:
6ODM
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MMDB ID:
176592
PDB Deposition Date:
2019/3/26
Updated in MMDB:
2019/12
Experimental Method:
electron microscopy
Resolution:
4.3 Å
Source Organism:
Human alphaherpesvirus 1 strain KOS
Similar Structures:
VAST+
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Biological Unit for 6ODM: 19-meric; determined by author
Molecular Components in 6ODM
Label
Count
Molecule
Proteins (19 molecules)
T
W
S
X
4
Major Capsid Protein
L
P
E
F
4
Small Capsomere-interacting Protein
5
D
2
Triplex Capsid Protein 1
6
7
H
A
4
Triplex Capsid Protein 2
C
1
Capsid Vertex Component 1
G
K
2
Capsid Vertex Component 2
O
B
2
Large Tegument Protein Deneddylase
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH.
"
MMDB and VAST+: tracking structural similarities between macromolecular complexes.
Nucleic Acids Res. 2014 Jan; 42(Database issue)
:D297-303