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6OAB:
Cdc48-Npl4 complex processing poly-ubiquitinated substrate in the presence of ADP-BeFx, state 2
PDB ID:
6OAB
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MMDB ID:
177027
PDB Deposition Date:
2019/3/15
Updated in MMDB:
2019/08
Experimental Method:
electron microscopy
Resolution:
3.6 Å
Source Organism:
Saccharomyces cerevisiae
Similar Structures:
VAST+
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Biological Unit for 6OAB: hexameric; determined by author
Molecular Components in 6OAB
Label
Count
Molecule
Proteins (6 molecules)
D
E
B
C
A
5
Cell Division Control Protein 48
(Gene symbol:
CDC48
)
H
1
Poly(alanine) Substrate
Chemicals and Non-standard biopolymers (18 molecules)
1
10
ADENOSINE-5'-DIPHOSPHATE
2
8
BERYLLIUM TRIFLUORIDE ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH.
"
MMDB and VAST+: tracking structural similarities between macromolecular complexes.
Nucleic Acids Res. 2014 Jan; 42(Database issue)
:D297-303