6O6C: RNA polymerase II elongation complex arrested at a CPD lesion

PDB ID: 6O6CDownload
MMDB ID: 176811
PDB Deposition Date: 2019/3/5
Updated in MMDB: 2019/09
Experimental Method:
electron microscopy
Resolution: 3.1  Å
Source Organism:
Similar Structures:
Biological Unit for 6O6C: tridecameric; determined by author
Molecular Components in 6O6C
Label Count Molecule
Proteins (10 molecules)
1
DNA-directed RNA Polymerase II Subunit Rpb1
(Gene symbol: RPO21)
Molecule annotation
1
DNA-directed RNA Polymerase II Subunit Rpb2
(Gene symbol: RPB2)
Molecule annotation
1
DNA-directed RNA Polymerase II Subunit Rpb3
(Gene symbol: RPB3)
Molecule annotation
1
DNA-directed RNA Polymerases I, II, and III Subunit Rpabc1
(Gene symbol: RPB5)
Molecule annotation
1
DNA-directed RNA Polymerases I, II, and III Subunit Rpabc2
(Gene symbol: RPO26)
Molecule annotation
1
DNA-directed RNA Polymerases I, II, and III Subunit Rpabc3
(Gene symbol: RPB8)
Molecule annotation
1
DNA-directed RNA Polymerase II Subunit Rpb9
(Gene symbol: RPB9)
Molecule annotation
1
DNA-directed RNA Polymerases I, II, and III Subunit Rpabc5
(Gene symbol: RPB10)
Molecule annotation
1
DNA-directed RNA Polymerase II Subunit Rpb11
(Gene symbol: RPB11)
Molecule annotation
1
DNA-directed RNA Polymerases I, II, and III Subunit Rpabc4
(Gene symbol: RPC10)
Molecule annotation
Nucleotides(3 molecules)
1
RNA (5'-r(p*ap*up*cp*gp*ap*gp*ap*gp*g)-3')
Molecule annotation
1
DNA (5'-d(p*gp*gp*ap*gp*ap*ap*gp*gp*ap*gp*cp*ap*gp*ap*gp*c)-3')
Molecule annotation
1
DNA (27-mer)
Molecule annotation
Chemicals and Non-standard biopolymers (9 molecules)
1
8
ZINC IONZINC ION
2
1
MAGNESIUM IONMAGNESIUM ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303