6NF2: Cryo-EM structure of vaccine-elicited antibody 0PV-c.01 in complex with HIV-1 Env BG505 DS-SOSIP and antibodies VRC03 and PGT122

PDB ID: 6NF2Download
MMDB ID: 177717
PDB Deposition Date: 2018/12/18
Updated in MMDB: 2019/12
Experimental Method:
electron microscopy
Resolution: 3.7  Å
Source Organism:
Human immunodeficiency virus 1▼
Similar Structures:
Biological Unit for 6NF2: 24-meric; determined by author
Molecular Components in 6NF2
Label Count Molecule
Proteins (24 molecules)
3
Envelope Glycoprotein Gp120
Molecule annotation
3
Envelope Glycoprotein Gp41
Molecule annotation
3
Vrc03 Heavy Chain
Molecule annotation
3
Vrc03 Light Chain
Molecule annotation
3
Pgt122 Heavy Chain
Molecule annotation
3
Pgt122 Light Chain
Molecule annotation
3
0pv-c.01 Heavy Chain
Molecule annotation
3
0pv-c.01 Light Chain
Molecule annotation
Chemicals and Non-standard biopolymers (186 molecules)
1
105
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
2
33
beta-D-mannopyranosebeta-D-mannopyranose
3
48
alpha-D-mannopyranosealpha-D-mannopyranose
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303