National Center for
Biotechnology Information

6NDY: Vps4 with Cyclic Peptide Bound in the Central Pore

PDB ID:

MMDB ID:

178658

PDB Deposition Date:

2018/12/14

Updated in MMDB:

2019/12

Experimental Method:

electron microscopy

Resolution:

3.6 Å

Source Organism:

synthetic construct▼

Taxonomy	Molecule
synthetic construct	G
Saccharomyces cerevisiae	A, B, C, D, E

Similar Structures:

Biological Unit for 6NDY: hexameric; determined by author

Molecular Components in 6NDY
Label	Count	Molecule
Proteins (6 molecules)
A B C D E	5	Vacuolar Protein Sorting-associated Protein 4
G	1	Designed Cyclic Peptide
Chemicals and Non-standard biopolymers (12 molecules)
1	5	ADENOSINE-5'-DIPHOSPHATE
2	3	BERYLLIUM TRIFLUORIDE ION
3	4	MAGNESIUM ION

* Click molecule labels to explore molecular sequence information.

Citing MMDB