6N5P: Structure of Human pir-miRNA-340 Apical Loop and One-base-pair Fused to the YdaO Riboswitch Scaffold

PDB ID: 6N5PDownload
MMDB ID: 181708
PDB Deposition Date: 2018/11/22
Updated in MMDB: 2019/12
Experimental Method:
x-ray diffraction
Resolution: 2.991  Å
Source Organism:
Biological Unit for 6N5P: monomeric; determined by author and by software (PISA)
Molecular Components in 6N5P
Label Count Molecule
Nucleotide(1 molecule)
1
RNA (127-mer)
Molecule annotation
Chemicals and Non-standard biopolymers (8 molecules)
1
2
(2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide(2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide
2
4
MAGNESIUM IONMAGNESIUM ION
3
1
POTASSIUM IONPOTASSIUM ION
4
1
SULFATE IONSULFATE ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303