6MFW: Crystal structure of a 4-domain construct of LgrA in the substrate donation state

PDB ID: 6MFWDownload
MMDB ID: 181458
PDB Deposition Date: 2018/9/12
Updated in MMDB: 2019/11
Experimental Method:
x-ray diffraction
Resolution: 2.5  Å
Source Organism:
Similar Structures:
Biological Unit for 6MFW: monomeric; determined by author and by software (PISA)
Molecular Components in 6MFW
Label Count Molecule
Protein (1 molecule)
1
Linear Gramicidin Synthase Subunit a
Molecule annotation
Chemicals and Non-standard biopolymers (6 molecules)
1
1
(2~{R})-~{N}-[3-[2-[[(2~{S})-2-formamido-3-methyl-butanoyl]amino]ethylamino]-3-oxidanylidene-propyl]-3,3-dimethyl-2-oxidanyl-4-[oxidanyl-bis(oxidanylidene)-$l^{6}-phosphanyl]oxy-butanamide(2~{R})-~{N}-[3-[2-[[(2~{S})-2-formamido-3-methyl-butanoyl]amino]ethylamino]-3-oxidanylidene-propyl]-3,3-dimethyl-2-oxidanyl-4-[oxidanyl-bis(oxidanylidene)-$l^{6}-phosphanyl]oxy-butanamide
2
1
N-{[4-({[(6R)-2-amino-5-formyl-4-oxo-1,4,5,6,7,8-hexahydropteridin-6-yl]methyl}amino)phenyl]carbonyl}-L-glutamic acidN-{[4-({[(6R)-2-amino-5-formyl-4-oxo-1,4,5,6,7,8-hexahydropteridin-6-yl]methyl}amino)phenyl]carbonyl}-L-glutamic acid
3
1
DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTERDIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER
4
1
VALINEVALINE
5
1
PHOSPHATE IONPHOSPHATE ION
6
1
MAGNESIUM IONMAGNESIUM ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303