6LDM: Structural basis of G-quadruplex DNA recognition by the yeast telomeric protein Rap1

PDB ID: 6LDMDownload
MMDB ID: 185258
PDB Deposition Date: 2019/11/22
Updated in MMDB: 2023/11
Experimental Method:
x-ray diffraction
Resolution: 2.4  Å
Source Organism:
Saccharomyces cerevisiae S288C▼
Similar Structures:
Biological Unit for 6LDM: dimeric; determined by author and by software (PISA)
Molecular Components in 6LDM
Label Count Molecule
Protein (1 molecule)
1
DNA-binding Protein Rap1
Molecule annotation
Nucleotide(1 molecule)
1
G-guadruplex DNA
Molecule annotation
Chemicals and Non-standard biopolymers (18 molecules)
1
1
GLYCEROLGLYCEROL
2
1
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
3
11
SODIUM IONSODIUM ION
4
5
POTASSIUM IONPOTASSIUM ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303