6L76: Crystal structure of the Ni(II)(Chro)2-d(TTGGGCCGAA/TTCGGCCCAA) complex at 2.94 angstrom resolution

PDB ID: 6L76Download
MMDB ID: 197332
PDB Deposition Date: 2019/10/31
Updated in MMDB: 2023/11
Experimental Method:
x-ray diffraction
Resolution: 2.94  Å
Source Organism:
Biological Unit for 6L76: dimeric; determined by author and by software (PISA)
Molecular Components in 6L76
Label Count Molecule
Nucleotides(2 molecules)
1
DNA (5'-d(*tp*tp*gp*gp*gp*cp*cp*gp*ap*a)-3')
Molecule annotation
1
DNA (5'-d(*tp*tp*cp*gp*gp*cp*cp*cp*ap*a)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (13 molecules)
1
2
2,6-dideoxy-4-O-methyl-alpha-D-galactopyranose2,6-dideoxy-4-O-methyl-alpha-D-galactopyranose
2
3
(2R,5S,6R)-6-methyltetrahydro-2H-pyran-2,5-diol(2R,5S,6R)-6-methyltetrahydro-2H-pyran-2,5-diol
3
2
3-C-methyl-4-O-acetyl-alpha-L-Olivopyranose3-C-methyl-4-O-acetyl-alpha-L-Olivopyranose
4
1
(2R,3R,6R)-6-hydroxy-2-methyltetrahydro-2H-pyran-3-yl acetate(2R,3R,6R)-6-hydroxy-2-methyltetrahydro-2H-pyran-3-yl acetate
5
3
(1S)-5-deoxy-1-O-methyl-1-C-[(2R,3S)-3,5,7,10-tetrahydroxy-6-methyl-4-oxo-1,2,3,4-tetrahydroanthracen-2-yl]-D-xylulose(1S)-5-deoxy-1-O-methyl-1-C-[(2R,3S)-3,5,7,10-tetrahydroxy-6-methyl-4-oxo-1,2,3,4-tetrahydroanthracen-2-yl]-D-xylulose
6
2
NICKEL (II) IONNICKEL (II) ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303