6KSF: Crystal Structure of ALKBH1 bound to 21-mer DNA bulge

PDB ID: 6KSFDownload
MMDB ID: 186055
PDB Deposition Date: 2019/8/23
Updated in MMDB: 2023/11
Experimental Method:
x-ray diffraction
Resolution: 2.4  Å
Source Organism:
Mus musculus▼
Similar Structures:
Biological Unit for 6KSF: trimeric; determined by author and by software (PISA)
Molecular Components in 6KSF
Label Count Molecule
Protein (1 molecule)
1
Alpha-ketoglutarate-dependent Dioxygenase Alkb Homolog 1
Molecule annotation
Nucleotides(2 molecules)
1
DNA (5'-d(*dgp*dcp*dtp*dgp*dap*dgp*dtp*dgp*dcp*dcp*dcp*dgp*dcp*dgp*dtp*dgp*dcp*dtp*dgp*dgp*dap*dtp*dcp*dc)-3')
Molecule annotation
1
DNA (5'-d(*dgp*dgp*dap*dtp*dcp*dcp*dap*dgp*dcp*dap*dcp*dgp*dcp*dcp*dap*dcp*dtp*dcp*dap*dgp*dc)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (4 molecules)
1
2
CHLORIDE IONCHLORIDE ION
2
1
SUCCINIC ACIDSUCCINIC ACID
3
1
propane-1-thiolpropane-1-thiol
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303