6JKI: Crystal structure and catalytic mechanism of the essential m1G37 tRNA methyltransferase TrmD from Pseudomonas aeruginosa

PDB ID: 6JKIDownload
MMDB ID: 176977
PDB Deposition Date: 2019/3/1
Updated in MMDB: 2023/11
Experimental Method:
x-ray diffraction
Resolution: 2.59  Å
Source Organism:
Similar Structures:
Biological Unit for 6JKI: dimeric; determined by author and by software (PISA)
Molecular Components in 6JKI
Label Count Molecule
Proteins (2 molecules)
2
tRNA (Guanine-n(1)-)-methyltransferase
Molecule annotation
Chemicals and Non-standard biopolymers (19 molecules)
1
2
SINEFUNGINSINEFUNGIN
2
10
GLYCEROLGLYCEROL
3
3
MANGANESE (II) IONMANGANESE (II) ION
4
2
SODIUM IONSODIUM ION
5
2
DI(HYDROXYETHYL)ETHERDI(HYDROXYETHYL)ETHER
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303