6J0I: Structure of [Co2+-(Chromomycin A3)2]-d(TTGGCGAA)2 complex

PDB ID: 6J0IDownload
MMDB ID: 177680
PDB Deposition Date: 2018/12/24
Updated in MMDB: 2023/11
Experimental Method:
x-ray diffraction
Resolution: 2.5  Å
Source Organism:
Biological Unit for 6J0I: dimeric; determined by author and by software (PISA)
Molecular Components in 6J0I
Label Count Molecule
Nucleotides(2 molecules)
2
DNA (5'-d(*tp*tp*gp*gp*cp*gp*ap*a)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (17 molecules)
1
3
(2R,3R,6R)-6-hydroxy-2-methyltetrahydro-2H-pyran-3-yl acetate(2R,3R,6R)-6-hydroxy-2-methyltetrahydro-2H-pyran-3-yl acetate
2
3
2,6-dideoxy-4-O-methyl-alpha-D-galactopyranose2,6-dideoxy-4-O-methyl-alpha-D-galactopyranose
3
5
(2R,5S,6R)-6-methyltetrahydro-2H-pyran-2,5-diol(2R,5S,6R)-6-methyltetrahydro-2H-pyran-2,5-diol
4
2
3-C-methyl-4-O-acetyl-alpha-L-Olivopyranose3-C-methyl-4-O-acetyl-alpha-L-Olivopyranose
5
2
1,2-HYDRO-1-OXY-3,4-HYDRO-3-(1-METHOXY-2-OXY-3,4-DIHYDROXYPENTYL)-8,9-DIHYROXY-7-METHYLANTHRACENE1,2-HYDRO-1-OXY-3,4-HYDRO-3-(1-METHOXY-2-OXY-3,4-DIHYDROXYPENTYL)-8,9-DIHYROXY-7-METHYLANTHRACENE
6
2
COBALT (II) IONCOBALT (II) ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303