6H10: Crystal Structure of KDM4D with tetrazolylhydrazide ligand NR073

PDB ID: 6H10Download
MMDB ID: 183423
PDB Deposition Date: 2018/7/10
Updated in MMDB: 2024/01
Experimental Method:
x-ray diffraction
Resolution: 1.104  Å
Source Organism:
Similar Structures:
Biological Unit for 6H10: monomeric; determined by author and by software (PISA)
Molecular Components in 6H10
Label Count Molecule
Protein (1 molecule)
1
Lysine-specific Demethylase 4D
(Gene symbol: KDM4D)
Molecule annotation
Chemicals and Non-standard biopolymers (17 molecules)
1
1
ZINC IONZINC ION
2
1
CHLORIDE IONCHLORIDE ION
3
1
SODIUM IONSODIUM ION
4
9
1,2-ETHANEDIOL1,2-ETHANEDIOL
5
1
SULFATE IONSULFATE ION
6
1
NICKEL (II) IONNICKEL (II) ION
7
2
~{N}-[(~{E})-(4-methylphenyl)methylideneamino]-2-(2~{H}-1,2,3,4-tetrazol-5-yl)ethanamide~{N}-[(~{E})-(4-methylphenyl)methylideneamino]-2-(2~{H}-1,2,3,4-tetrazol-5-yl)ethanamide
8
1
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303