6H0W: Crystal Structure of KDM4D with tetrazolylhydrazide ligand NS035

PDB ID: 6H0WDownload
MMDB ID: 183419
PDB Deposition Date: 2018/7/10
Updated in MMDB: 2024/01
Experimental Method:
x-ray diffraction
Resolution: 1.23  Å
Source Organism:
Similar Structures:
Biological Unit for 6H0W: monomeric; determined by author and by software (PISA)
Molecular Components in 6H0W
Label Count Molecule
Protein (1 molecule)
1
Lysine-specific Demethylase 4D
(Gene symbol: KDM4D)
Molecule annotation
Chemicals and Non-standard biopolymers (17 molecules)
1
1
ZINC IONZINC ION
2
1
SODIUM IONSODIUM ION
3
9
1,2-ETHANEDIOL1,2-ETHANEDIOL
4
1
SULFATE IONSULFATE ION
5
1
NICKEL (II) IONNICKEL (II) ION
6
1
CHLORIDE IONCHLORIDE ION
7
1
(2~{R})-3-phenyl-2-(2~{H}-1,2,3,4-tetrazol-5-yl)propanehydrazide(2~{R})-3-phenyl-2-(2~{H}-1,2,3,4-tetrazol-5-yl)propanehydrazide
8
1
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
9
1
[2-(2~{H}-1,2,3,4-tetrazol-5-yl)ethanoylamino]azanium[2-(2~{H}-1,2,3,4-tetrazol-5-yl)ethanoylamino]azanium
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303