6GO5: TdT chimera (Loop1 of pol mu) - Ternary complex with 1-nt gapped DNA substrate

PDB ID: 6GO5Download
MMDB ID: 176263
PDB Deposition Date: 2018/6/1
Updated in MMDB: 2019/08
Experimental Method:
x-ray diffraction
Resolution: 2.35  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 6GO5: tetrameric; determined by author and by software (PISA)
Molecular Components in 6GO5
Label Count Molecule
Protein (1 molecule)
1
DNA Nucleotidylexotransferase,dna-directed Dna/rna Polymerase Mu,dna Nucleotidylexotransferase
Molecule annotation
Nucleotides(3 molecules)
1
DNA (5'-d(*cp*gp*cp*tp*gp*gp*cp*ap*ap*ap*cp*a)-3')
Molecule annotation
1
DNA (5'-d(*tp*gp*tp*tp*tp*g)-3')
Molecule annotation
1
DNA (5'-d(*ap*cp*ap*gp*cp*g)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (3 molecules)
1
1
SODIUM IONSODIUM ION
2
1
MAGNESIUM IONMAGNESIUM ION
3
1
2'-deoxy-5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]cytidine2'-deoxy-5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]cytidine
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303