National Center for
Biotechnology Information

6BY1: E. coli pH03H9 complex

PDB ID:

6BY1 Download

MMDB ID:

174997

PDB Deposition Date:

2017/12/19

Updated in MMDB:

2021/02

Experimental Method:

x-ray diffraction

Resolution:

3.94 Å

Source Organism:

Escherichia coli K-12▼

Taxonomy

Molecule

Escherichia coli K-12

AA, CA, CB, AV, AY, CC, CD, CE, CF,
CG, CH, C5, CI, CJ, CK, CL, CM,
CN, CO, CP, CQ, CR, CS, CT, CU,
CV, CW, CX, CY, CZ, C0, C1, C2,
C3, C4, C6, AW, AB, AC, AD, AE,
AF, AG, AH, AI, AJ, AK, AL, AM,
AN, AO, AP, AQ, AR, AS, AT, BA,
DA, DB, BV, DC, DD, DE, DF, DG,
DH, DI, DJ, DK, DL, DM, DN, DO,
DP, DQ, DR, DS, DT, DU, DV, DW,
DX, DY, DZ, D0, D1, D2, D3, D4,
D6, BW, BB, BC, BD, BE, BF, BG,
BH, BI, BJ, BK, BL, BM, BN, BO,
BP, BQ, BR, BS, BT

Escherichia coli

AX, BX

Similar Structures:

Biological Unit for 6BY1: 57-meric; determined by author

Molecular Components in 6BY1
Label	Count	Molecule
Proteins (50 molecules)
CC	1	50S Ribosomal Protein L2
CD	1	50S Ribosomal Protein L3
CE	1	50S Ribosomal Protein L4
CF	1	50S Ribosomal Protein L5
CG	1	50S Ribosomal Protein L6
CH	1	50S Ribosomal Protein L9
C5	1	50S Ribosomal Protein L10
CI	1	50S Ribosomal Protein L11
CJ	1	50S Ribosomal Protein L13
CK	1	50S Ribosomal Protein L14
CL	1	50S Ribosomal Protein L15
CM	1	50S Ribosomal Protein L16
CN	1	50S Ribosomal Protein L17
CO	1	50S Ribosomal Protein L18
CP	1	50S Ribosomal Protein L19
CQ	1	50S Ribosomal Protein L20
CR	1	50S Ribosomal Protein L21
CS	1	50S Ribosomal Protein L22
CT	1	50S Ribosomal Protein L23
CU	1	50S Ribosomal Protein L24
CV	1	50S Ribosomal Protein L25
CW	1	50S Ribosomal Protein L27
CX	1	50S Ribosomal Protein L28
CY	1	50S Ribosomal Protein L29
CZ	1	50S Ribosomal Protein L30
C0	1	50S Ribosomal Protein L31
C1	1	50S Ribosomal Protein L32
C2	1	50S Ribosomal Protein L33
C3	1	50S Ribosomal Protein L34
C4	1	50S Ribosomal Protein L35
C6	1	50S Ribosomal Protein L36
AB	1	30S Ribosomal Protein S2
AC	1	30S Ribosomal Protein S3
AD	1	30S Ribosomal Protein S4
AE	1	30S Ribosomal Protein S5
AF	1	30S Ribosomal Protein S6
AG	1	30S Ribosomal Protein S7
AH	1	30S Ribosomal Protein S8
AI	1	30S Ribosomal Protein S9
AJ	1	30S Ribosomal Protein S10
AK	1	30S Ribosomal Protein S11
AL	1	30S Ribosomal Protein S12
AM	1	30S Ribosomal Protein S13
AN	1	30S Ribosomal Protein S14
AO	1	30S Ribosomal Protein S15
AP	1	30S Ribosomal Protein S16
AQ	1	30S Ribosomal Protein S17
AR	1	30S Ribosomal Protein S18
AS	1	30S Ribosomal Protein S19
AT	1	30S Ribosomal Protein S20
Nucleotides(7 molecules)
AA	1	16S Ribosomal RNA
CA	1	23S Ribosomal RNA
CB	1	5S Ribosomal RNA
AV AY AW	3	Valine-specific Transfer RNA
AX	1	Messenger RNA
Chemicals and Non-standard biopolymers (211 molecules)
1	209	MAGNESIUM ION
2	2	ZINC ION

* Click molecule labels to explore molecular sequence information.

Citing MMDB

Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303