5Y34: Membrane-bound respiratory [NiFe]-hydrogenase from Hydrogenovibrio marinus in a ferricyanide-oxidized condition

PDB ID: 5Y34Download
MMDB ID: 153814
PDB Deposition Date: 2017/7/27
Updated in MMDB: 2023/11
Experimental Method:
x-ray diffraction
Resolution: 1.32  Å
Source Organism:
Similar Structures:
Biological Unit for 5Y34: tetrameric; determined by author and by software (PISA)
Molecular Components in 5Y34
Label Count Molecule
Proteins (4 molecules)
2
Hydrogenase
Molecule annotation
2
Membrane-bound Hydrogenase Small Subunit
Molecule annotation
Chemicals and Non-standard biopolymers (18 molecules)
1
2
NICKEL (III) IONNICKEL (III) ION
2
2
CARBONMONOXIDE-(DICYANO) IRONCARBONMONOXIDE-(DICYANO) IRON
3
2
OXYGEN ATOMOXYGEN ATOM
4
4
GLYCEROLGLYCEROL
5
2
MAGNESIUM IONMAGNESIUM ION
6
2
FE4-S3 CLUSTERFE4-S3 CLUSTER
7
2
FE3-S4 CLUSTERFE3-S4 CLUSTER
8
2
IRON/SULFUR CLUSTERIRON/SULFUR CLUSTER
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303