National Center for
Biotechnology Information

5XOG: RNA Polymerase II elongation complex bound with Spt5 KOW5 and Elf1

PDB ID:

MMDB ID:

153807

PDB Deposition Date:

2017/5/28

Updated in MMDB:

2017/09

Experimental Method:

x-ray diffraction

Resolution:

3 Å

Source Organism:

Komagataella phaffii CBS 7435▼

Similar Structures:

Biological Unit for 5XOG: heptadecameric; determined by author

Molecular Components in 5XOG
Label	Count	Molecule
Proteins (14 molecules)
A	1	DNA-directed RNA Polymerase Subunit
B	1	DNA-directed RNA Polymerase Subunit Beta
C	1	RNA Polymerase II Third Largest Subunit B44, Part of Central Core
D	1	RNA Polymerase II Subunit B32
E	1	RNA Polymerase Subunit Abc27, Common to RNA Polymerases I, II, and III
F	1	RNA Polymerase Subunit Abc23, Common to RNA Polymerases I, II, and III
G	1	RNA Polymerase II Subunit
H	1	RNA Polymerase Subunit Abc14.5, Common to RNA Polymerases I, II, and III
I	1	DNA-directed RNA Polymerase Subunit
J	1	RNA Polymerase Subunit Abc10-beta, Common to RNA Polymerases I, II, and III
K	1	RNA Polymerase II Subunit B12.5
L	1	RNA Polymerase Subunit Abc10-alpha
M	1	Transcription Elongation Factor 1 Homolog
W	1	Spt4/5 Complex Component
Nucleotides(3 molecules)
P	1	RNA (5'-r(upupupupupupupapupcpgpapgpapgpgp*u)-3')
T	1	DNA (39-mer)
N	1	DNA (30-mer)
Chemicals and Non-standard biopolymers (11 molecules)
1	9	ZINC ION
2	1	MAGNESIUM ION
3	1	DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER

* Click molecule labels to explore molecular sequence information.

Citing MMDB