5XEW: Crystal structure of the [Ni2+-(chromomycin A3)2]-CCG repeats complex

PDB ID: 5XEWDownload
MMDB ID: 152053
PDB Deposition Date: 2017/4/6
Updated in MMDB: 2017/07
Experimental Method:
x-ray diffraction
Resolution: 1.751  Å
Source Organism:
Biological Unit for 5XEW: dimeric; determined by author
Molecular Components in 5XEW
Label Count Molecule
Nucleotides(2 molecules)
2
DNA (5'-d(*tp*tp*cp*cp*gp*cp*cp*gp*cp*cp*gp*ap*a)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (15 molecules)
1
4
(2R,5S,6R)-6-methyltetrahydro-2H-pyran-2,5-diol(2R,5S,6R)-6-methyltetrahydro-2H-pyran-2,5-diol
2
2
3-C-methyl-4-O-acetyl-alpha-L-Olivopyranose3-C-methyl-4-O-acetyl-alpha-L-Olivopyranose
3
2
(2R,3R,6R)-6-hydroxy-2-methyltetrahydro-2H-pyran-3-yl acetate(2R,3R,6R)-6-hydroxy-2-methyltetrahydro-2H-pyran-3-yl acetate
4
2
2,6-dideoxy-4-O-methyl-alpha-D-galactopyranose2,6-dideoxy-4-O-methyl-alpha-D-galactopyranose
5
2
(1S)-5-deoxy-1-O-methyl-1-C-[(2R,3S)-3,5,7,10-tetrahydroxy-6-methyl-4-oxo-1,2,3,4-tetrahydroanthracen-2-yl]-D-xylulose(1S)-5-deoxy-1-O-methyl-1-C-[(2R,3S)-3,5,7,10-tetrahydroxy-6-methyl-4-oxo-1,2,3,4-tetrahydroanthracen-2-yl]-D-xylulose
6
3
NICKEL (II) IONNICKEL (II) ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303