5X30: Crystal structure of Pseudomonas putida methionine gamma-lyase C116H mutant with L-homocysteine intermediates

PDB ID: 5X30Download
MMDB ID: 238964
PDB Deposition Date: 2017/2/2
Updated in MMDB: 2023/11
Experimental Method:
x-ray diffraction
Resolution: 1.7  Å
Source Organism:
Similar Structures:
Biological Unit for 5X30: tetrameric; determined by author and by software (PISA)
Molecular Components in 5X30
Label Count Molecule
Proteins (4 molecules)
2
L-methionine Gamma-lyase
Molecule annotation
2
L-methionine Gamma-lyase
Molecule annotation
Chemicals and Non-standard biopolymers (5 molecules)
1
2
2-AMINO-4-MERCAPTO-BUTYRIC ACID2-AMINO-4-MERCAPTO-BUTYRIC ACID
2
1
(2E)-2-{[(1E)-{3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene]amino}but-2-enoic acid(2E)-2-{[(1E)-{3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene]amino}but-2-enoic acid
3
1
HYDROSULFURIC ACIDHYDROSULFURIC ACID
4
1
(2~{S})-2-[[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylamino]-4-sulfanyl-butanoic acid(2~{S})-2-[[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylamino]-4-sulfanyl-butanoic acid
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303