5W2C: Structure of human DNA polymerase kappa in complex with Lucidin-derived DNA adduct and incoming dAMPNPP

PDB ID: 5W2CDownload
MMDB ID: 155169
PDB Deposition Date: 2017/6/6
Updated in MMDB: 2017/12
Experimental Method:
x-ray diffraction
Resolution: 2.5  Å
Source Organism:
unidentified▼
Similar Structures:
Biological Unit for 5W2C: tetrameric; determined by author
Molecular Components in 5W2C
Label Count Molecule
Protein (1 molecule)
1
DNA Polymerase Kappa
Molecule annotation
Nucleotides(3 molecules)
1
DNA (5'-d(p*cp*gp*gp*ap*tp*cp*gp*ap*c)-3')
Molecule annotation
2
DNA (5'-d(*cp*tp*ap*tp*(ldg)p*tp*cp*gp*ap*tp*cp*cp*g)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (8 molecules)
1
3
MAGNESIUM IONMAGNESIUM ION
2
1
GLYCEROLGLYCEROL
3
2
1,2-ETHANEDIOL1,2-ETHANEDIOL
4
1
DI(HYDROXYETHYL)ETHERDI(HYDROXYETHYL)ETHER
5
1
2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]adenosine2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]adenosine
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303