5W2A: Structure of human DNA polymerase kappa in complex with Lucidin-derived DNA adduct and incoming dCMPNPP

PDB ID: 5W2ADownload
MMDB ID: 155168
PDB Deposition Date: 2017/6/6
Updated in MMDB: 2017/12
Experimental Method:
x-ray diffraction
Resolution: 2.9  Å
Source Organism:
unidentified▼
Similar Structures:
Biological Unit for 5W2A: tetrameric; determined by author
Molecular Components in 5W2A
Label Count Molecule
Protein (1 molecule)
1
DNA Polymerase Kappa
Molecule annotation
Nucleotides(3 molecules)
1
DNA (5'-d(p*gp*cp*gp*gp*ap*tp*cp*ap*g)-3')
Molecule annotation
2
DNA (5'-d(*ap*tp*gp*(ldg)p*cp*tp*gp*ap*tp*cp*cp*gp*c)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (4 molecules)
1
1
MAGNESIUM IONMAGNESIUM ION
2
1
GLYCEROLGLYCEROL
3
1
2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine
4
1
TRIETHYLENE GLYCOLTRIETHYLENE GLYCOL
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303