5W0N: Structure of human TUT7 catalytic module (CM) in complex with UMPNPP and U2 RNA

PDB ID: 5W0NDownload
MMDB ID: 152292
PDB Deposition Date: 2017/5/31
Updated in MMDB: 2023/10
Experimental Method:
x-ray diffraction
Resolution: 2.497  Å
Source Organism:
Similar Structures:
Biological Unit for 5W0N: monomeric; determined by author
Molecular Components in 5W0N
Label Count Molecule
Protein (1 molecule)
1
Terminal Uridylyltransferase 7
(Gene symbol: TUT7)
Molecule annotation
Chemicals and Non-standard biopolymers (6 molecules)
1
1
MAGNESIUM IONMAGNESIUM ION
2
1
5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]uridine5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]uridine
3
1
[(2R,3S,4R,5R)-5-(2,4-DIOXO-3,4-DIHYDROPYRIMIDIN-1(2H)-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL (2R,3S,4R,5R)-5-(2,4-DIOXO-3,4-DIHYDROPYRIMIDIN-1(2H)-YL)-4-HYDROXY-2-(HYDROXYMETHYL)TETRAHYDROFURAN-3-YL HYDROGEN (S)-PHOSPHATE[(2R,3S,4R,5R)-5-(2,4-DIOXO-3,4-DIHYDROPYRIMIDIN-1(2H)-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL (2R,3S,4R,5R)-5-(2,4-DIOXO-3,4-DIHYDROPYRIMIDIN-1(2H)-YL)-4-HYDROXY-2-(HYDROXYMETHYL)TETRAHYDROFURAN-3-YL HYDROGEN (S)-PHOSPHATE
4
1
ZINC IONZINC ION
5
1
IODIDE IONIODIDE ION
6
1
SULFATE IONSULFATE ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303