5VZA: Pre-catalytic ternary complex of human Polymerase Mu (G433S) mutant with incoming nonhydrolyzable UMPNPP

PDB ID: 5VZADownload
MMDB ID: 152525
PDB Deposition Date: 2017/5/27
Updated in MMDB: 2019/12
Experimental Method:
x-ray diffraction
Resolution: 1.501  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 5VZA: tetrameric; determined by author and by software (PISA)
Molecular Components in 5VZA
Label Count Molecule
Protein (1 molecule)
1
DNA-directed Dna/rna Polymerase MU
Molecule annotation
Nucleotides(3 molecules)
1
DNA (5'-d(*cp*gp*gp*cp*ap*tp*ap*cp*g)-3')
Molecule annotation
1
DNA (5'-d(*cp*gp*tp*a)-3')
Molecule annotation
1
DNA (5'-d(p*gp*cp*cp*g)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (6 molecules)
1
1
5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]uridine5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]uridine
2
2
MAGNESIUM IONMAGNESIUM ION
3
1
SODIUM IONSODIUM ION
4
2
1,2-ETHANEDIOL1,2-ETHANEDIOL
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303