5VYZ: Crystal structure of Lactococcus lactis pyruvate carboxylase in complex with cyclic-di-AMP

PDB ID: 5VYZDownload
MMDB ID: 153739
PDB Deposition Date: 2017/5/26
Updated in MMDB: 2017/09
Experimental Method:
x-ray diffraction
Resolution: 2.3  Å
Source Organism:
Similar Structures:
Biological Unit for 5VYZ: tetrameric; determined by author and by software (PISA)
Molecular Components in 5VYZ
Label Count Molecule
Proteins (4 molecules)
4
Pyruvate Carboxylase
Molecule annotation
Chemicals and Non-standard biopolymers (14 molecules)
1
4
MANGANESE (II) IONMANGANESE (II) ION
2
4
ADENOSINE-5'-DIPHOSPHATEADENOSINE-5'-DIPHOSPHATE
3
4
MAGNESIUM IONMAGNESIUM ION
4
2
(2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide(2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303