5VYQ: Crystal structure of the N-formyltransferase Rv3404c from mycobacterium tuberculosis in complex with YDP-Qui4N and folinic acid

PDB ID: 5VYQDownload
MMDB ID: 152735
PDB Deposition Date: 2017/5/26
Updated in MMDB: 2023/10
Experimental Method:
x-ray diffraction
Resolution: 1.6  Å
Source Organism:
Similar Structures:
Biological Unit for 5VYQ: dimeric; determined by author and by software (PISA)
Molecular Components in 5VYQ
Label Count Molecule
Proteins (2 molecules)
2
Uncharacterized Protein
Molecule annotation
Chemicals and Non-standard biopolymers (18 molecules)
1
1
N-{[4-({[(6R)-2-amino-5-formyl-4-oxo-1,4,5,6,7,8-hexahydropteridin-6-yl]methyl}amino)phenyl]carbonyl}-L-glutamic acidN-{[4-({[(6R)-2-amino-5-formyl-4-oxo-1,4,5,6,7,8-hexahydropteridin-6-yl]methyl}amino)phenyl]carbonyl}-L-glutamic acid
2
1
dTDP-4-amino-4,6-dideoxyglucosedTDP-4-amino-4,6-dideoxyglucose
3
4
1,2-ETHANEDIOL1,2-ETHANEDIOL
4
4
SODIUM IONSODIUM ION
5
3
CHLORIDE IONCHLORIDE ION
6
2
3-[4-(2-HYDROXYETHYL)PIPERAZIN-1-YL]PROPANE-1-SULFONIC ACID3-[4-(2-HYDROXYETHYL)PIPERAZIN-1-YL]PROPANE-1-SULFONIC ACID
7
1
LITHIUM IONLITHIUM ION
8
1
THYMIDINE-5'-DIPHOSPHATETHYMIDINE-5'-DIPHOSPHATE
9
1
POTASSIUM IONPOTASSIUM ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303