5VYP: Crystal structure of the Plant Defensin NsD7 bound to PIP2

PDB ID: 5VYPDownload
MMDB ID: 153250
PDB Deposition Date: 2017/5/25
Updated in MMDB: 2024/12
Experimental Method:
x-ray diffraction
Resolution: 2.6  Å
Source Organism:
Similar Structures:
Biological Unit for 5VYP: 24-meric; determined by author and by software (PISA)
Molecular Components in 5VYP
Label Count Molecule
Proteins (24 molecules)
24
Defensin Nsd7
Molecule annotation
Chemicals and Non-standard biopolymers (44 molecules)
1
24
[(2R)-2-octanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate[(2R)-2-octanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate
2
8
SULFATE IONSULFATE ION
3
12
GLYCEROLGLYCEROL
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303