5VYB: Structure of the carbohydrate recognition domain of Dectin-2 complexed with a mammalian-type high mannose Man9GlcNAc2 oligosaccharide

PDB ID: 5VYBDownload
MMDB ID: 152517
PDB Deposition Date: 2017/5/24
Updated in MMDB: 2023/10
Experimental Method:
x-ray diffraction
Resolution: 2.4  Å
Source Organism:
Similar Structures:
Biological Unit for 5VYB: monomeric; determined by author and by software (PISA)
Molecular Components in 5VYB
Label Count Molecule
Protein (1 molecule)
1
C-type Lectin Domain Family 6 Member a
(Gene symbol: CLEC6A)
Molecule annotation
Chemicals and Non-standard biopolymers (11 molecules)
1
1
beta-D-mannopyranosebeta-D-mannopyranose
2
6
alpha-D-mannopyranosealpha-D-mannopyranose
3
2
CALCIUM IONCALCIUM ION
4
1
SODIUM IONSODIUM ION
5
1
DI(HYDROXYETHYL)ETHERDI(HYDROXYETHYL)ETHER
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303