5VRX: Human DNA polymerase beta pre-catalytic 8-oxoG:dC extension complex with dTTP bound in Watson-Crick conformation

PDB ID: 5VRXDownload
MMDB ID: 152880
PDB Deposition Date: 2017/5/11
Updated in MMDB: 2017/12
Experimental Method:
x-ray diffraction
Resolution: 2.2  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 5VRX: tetrameric; determined by author and by software (PISA)
Molecular Components in 5VRX
Label Count Molecule
Protein (1 molecule)
1
DNA Polymerase Beta
Molecule annotation
Nucleotides(3 molecules)
1
DNA (5'-d(*cp*cp*gp*ap*cp*ap*(8og)p*gp*cp*gp*cp*ap*tp*cp*ap*g)-3')
Molecule annotation
1
DNA (5'-d(*cp*tp*gp*ap*tp*gp*cp*gp*cp*c)-3')
Molecule annotation
1
DNA (5'-d(p*gp*tp*cp*gp*g)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (9 molecules)
1
5
CALCIUM IONCALCIUM ION
2
1
THYMIDINE-5'-TRIPHOSPHATETHYMIDINE-5'-TRIPHOSPHATE
3
1
IMIDAZOLEIMIDAZOLE
4
1
ACETATE IONACETATE ION
5
1
DI(HYDROXYETHYL)ETHERDI(HYDROXYETHYL)ETHER
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303