5VO8: X-ray crystal structure of a bacterial reiterative transcription complex of pyrG promoter

PDB ID: 5VO8Download
MMDB ID: 151177
PDB Deposition Date: 2017/5/2
Updated in MMDB: 2024/12
Experimental Method:
x-ray diffraction
Resolution: 3.3  Å
Source Organism:
Thermus thermophilus HB8▼
Similar Structures:
Biological Unit for 5VO8: nonameric; determined by author and by software (PISA)
Molecular Components in 5VO8
Label Count Molecule
Proteins (6 molecules)
2
DNA-directed RNA Polymerase Subunit Alpha
Molecule annotation
1
DNA-directed RNA Polymerase Subunit Beta
Molecule annotation
1
DNA-directed RNA Polymerase Subunit Beta'
Molecule annotation
1
DNA-directed RNA Polymerase Subunit Omega
Molecule annotation
1
RNA Polymerase Sigma Factor Siga
Molecule annotation
Nucleotides(3 molecules)
1
DNA (5'-d(p*gp*gp*tp*gp*cp*ap*tp*cp*ap*gp*ap*gp*cp*cp*cp*ap*ap*ap*a)-3')
Molecule annotation
1
DNA (5'-d(*tp*ap*tp*ap*ap*tp*gp*gp*gp*cp*tp*gp*ap*tp*gp*cp*ap*cp*c)-3')
Molecule annotation
1
RNA (5'-d(*(gtp))-r(p*gp*gp*gp*gp*gp*gp*g)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (5 molecules)
1
2
MAGNESIUM IONMAGNESIUM ION
2
1
PYROPHOSPHATE 2-PYROPHOSPHATE 2-
3
2
ZINC IONZINC ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303