5VN3: Cryo-EM model of B41 SOSIP.664 in complex with soluble CD4 (D1-D2) and fragment antigen binding variable domain of 17b

PDB ID: 5VN3Download
MMDB ID: 152721
PDB Deposition Date: 2017/4/28
Updated in MMDB: 2024/12
Experimental Method:
electron microscopy
Resolution: 3.7  Å
Source Organism:
Human immunodeficiency virus 1▼
Similar Structures:
Biological Unit for 5VN3: 15-meric; determined by author
Molecular Components in 5VN3
Label Count Molecule
Proteins (15 molecules)
3
17B FAB Light Chain
Molecule annotation
3
Envelope Glycoprotein Gp160
Molecule annotation
3
Envelope Glycoprotein Gp160
Molecule annotation
3
T-cell Surface Glycoprotein CD4
Molecule annotation
3
17B FAB Heavy Chain
Molecule annotation
Chemicals and Non-standard biopolymers (129 molecules)
1
90
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
2
21
beta-D-mannopyranosebeta-D-mannopyranose
3
18
alpha-D-mannopyranosealpha-D-mannopyranose
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303